I'd go back to the steering bearings. I found almost identical symptoms ended up coming down to the steering bearings although I couldn't seem to get any movement out of them... until I took the wheel off and checked again rocking the forks back and forth the slop was then very pronounced. Dunno why, maybe I just didn't check properly the first and second times?
Not sure how you have gone about checking them but you need to unload the front end with the wheel a couple of inches clear of the ground so you can push and pull the forks back and forth (any movement tighten or replace) and try rotating the bars side to side gently to feel for any notching in the bearings (particularly after tightening) if you feel a hint of notching (usually in the middle) replace the bearings and seats. You said they are tight. Check they aren't too tight. If you centre the bars then give a tiny nudge one way or the other to get them started, they should fall freely to the stops and bounce back a bit.
Otherwise I have heard that fork wear can lead to similar clunking. Is there any play in the discs?
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