Sounds like the reg/rec, which usually means you have to do the stator as well, I cant remember what the common mod is for the stator,
but I know you can use the reg/rec out of an 01 if its the Mosfet model, I ended up using one in my Hyo,
If you check up on the 400 Forum ( http://www.400greybike.com/ ) im sure you will find it.
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