for new plugs, they seem to be a litttle dark around the edges. i know that can be cuased due to many things, but the state of the plugs cant rule out a spark issue, imo. dont forget i'm suggesting intermitent spark fault, not consistant (overheating pick up vs cracked coil). though cracked leads probably could cause the coil to overheat, i guess.
that makes sense, it would take mre time for something to overheat from dead cold, from that point on, it would be a much shorter time period for when the problem returns.
heres a senario the old ford LTD's use to have - car would run well for the first 10 min, next 10min the car might loose power. about 20-40min of driving from cold, the engine would die. wait 15min and the car would start and you'd have 2-5 min to drive to saefty (no way you'd wanna push one of these home), wait another 15min to get another 2-5min of driving. the cause is due to a little piece of electronics on the side of the dissy over heating and preventing the pick up in the dissy from working. good news for the ford driver, the fix was to remove the electronic device, renew the thermal grease and reattach the device.
now im not saying this is your problem or fix, but your issues do fit in with that (and many other senarios i have come across) same type of issue.
loose wire causing overheating in the connector or at the grounding
faulty CDI unit
faulty magneto pickup
overheating electronics
overheating coil/s
cracked or faulty leads
faulty kill switch (handle bars OR side stand)
hairline crack in a fuse
just a few ideas of what could be the cause IF you have no to low spark when the fault arises.
another idea...... when you are testing for spark, if you find you have a good spark, pull out the existing plugs, straight after your test (during the fault, on the side of the road) and see if they are "wet" with fuel.
Just getting back to basics here. checking for spark and fuel while the fault exists
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