Good pictures, and plenty of shrapnel there.
Attachment 246996
Does your damaged piston look like picture 1.1.2 in the PDF, it does to me.
This is my take on it, the damaged piston is starting to develop the  classic melted piston look in the piston pin area from debris being  shaken up and down. Eroding the piston and marking the cylinder at the  end of the pin travel as they slam to a stop at each end of the stroke.  The clip and debris were not able to escape the piston cutout and were  held there and shaken up like they were in a cocktail shaker. 
Attachment 246999
This all started with the piston pin clip coming out. The clip was  trapped in the piston cutaway area and couldn’t escape or become trapped  in a transfer port like it might in a 2-Stroke. As it was shaken  violently up and down it eventually broke up the oil control land and  ring releasing debris that marked the bore, the marks are both sides as  the debris can travel to the other side of the piston through the hollow  piston pin.  The piston pin did not leave the classic tramlines, maybe  there was not enough time or its ends just did not dig into the bore.
Attachment 247002  TDC  BD
Attachment 247003C
The shrapnel damage evidence, is in the symmetry of the markings on the  cylinder wall matching the piston cut outs, on both sides and at TDC and  BDC.    Curved at TDC matching the pin cutout in the piston and  straight at BDC matching the straight bottom of the piston cutout. And  finishing at the exact extremes of the piston cutouts travel. I expect  if you put the piston in the bore the damage will exactly match the  cutouts at TDC and BDC. 
The clip may not have been fitted properly or was being hammered by the  piston pin due to a miss alignment problem and ejected, further  investigation of the damaged piston can reveal which.
 
Attachment 247000 Attachment 247001
If there is a miss alignment problem it will show in a diagonal wear  pattern on the damaged piston. Typically the top on one  side and the  bottom on the other side touches the bore and there is diagonal wear  lines between them on the thrust sides of the piston skirt. With such a  low mileage it may be hard to see but if its there, there should be some  indication.
 
			
		
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