I called FastBikeGear to check compatibility of the CA Cycleworks coils with the Ignitech CDI's (basically they aren't; they're a good match to the OEM Ducati ignition circuitry but won't work well with the TCIP-4) and ended up having a very informative chat about ignition pickups and testing.
Apparently halving the pickup gap increases the signal by a factor of 4. It is very possible that I'm simply running too wide a gap on the vertical cylinder, given how much of an effect distance has on an inductive pickup. It was also possible that the pickup has had an insulation breakdown to the engine cases and is leaking voltage. Testing one involves draining the oil and opening the engine; testing the other is just raising the tank and getting the multimeter out again.
So tonight I was checking insulation resistances, both cold and after a few minutes idling to get the engine up to temperature. These came in fine, with no continuity measured on any scale, hot or cold. While fussing around, purely by chance, I noticed a strong jet of air coming upwards from the vertical cylinder head. It initially appeared to be coming from around the spark plug. Putting a strip of rag around the base of the spark plug didn't make a difference, then further checking by hand seemed to establish that it's coming from a place close by the rear shock mount, on the left side of the head. I couldn't trace it further. It doesn't seem to be coming from the exhaust flange, and is definitely related to the engine running.
This is worrying. The horizontal head didn't have something similar, when I quickly checked. I'll have to work out a way to trace this air jet's source properly; it also looks like it's a good idea to finally get a compression gauge with an M12 x 1.25 adaptor.
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